PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00093566001
Common NameGSBRNA2T00093566001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 335aa    MW: 38057.6 Da    PI: 6.7457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00093566001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12157203455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  GSBRNA2T00093566001 157 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAQKHIKYLQ 203
                          699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-16157217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-11158206No hitNo description
SuperFamilySSF474592.88E-16158222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNMFSTRLFS DQELEENGII QQYGMNTIMG EIHEAHHTLS HSFPTRMLTT NDPSYDDLID  60
MKPSKILETT YISPKLQPPL SFPIPPYSKP HFHHQPSSKI LSFENATQNV MDYELSPTYQ  120
NSIFSPEVEA EVPPNWMNGK GAKRAQPLYK SQSNAQDHII AERKRREKLT QRFVALSALV  180
PGLKKMDKAS VLGDAQKHIK YLQEKVGEFE EQKRERRLES MVLVKKSKLI LDDNNQSSSS  240
SCCEDDSSTL DLPEIEVKFS DKDVLIKILC EKQKGHVAKI MAEVEKFHFS ITNSSVLPFG  300
PTLDITIIAK KESDFDMTLM DVVKSLRSAL SKFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00093566001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885670.0AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655007.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0721e-172BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A078IKT00.0A0A078IKT0_BRANA; BnaC03g61210D protein
STRINGBra010617.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-167bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]